Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKLSVFFIFLFCSIATAAESLPDLKIEKLDEGVYVHTSFEEVNGWGVVPKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSRSIPTYASELTNELLKKDGKVQATNSFSGVNYWLVKNKIEVFYPGPGHTPDNVVVWLPERKILFGGCFIKPYGLGNLGDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASLLKLTLEQAVKGLNESKKPSKPSN
1JJE Chain:B ((1-221))
------------------AESLPDLKIEKLDEGVYVHTSFEEVNGWGVVPKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSRSIPTYASELTNELLKKDGKVQATNSFSGVNYWLVKNKIEVFYPGPGHTPDNVVVWLPERKILFGGCFIKPYGLGNLGDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASLLKLTLEQAVKGLNESK-------
General information:
TITO was launched using:
RESULT:
Template:
1JJE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85656 for 1940 contacts (-44.2/contact) +
2D Compatibility (PS) -24206 + (NN) -13003 + (LL) 1776
1D Compatibility (HY) -31200 + (ID) 11050
Total energy: -163339.0 ( -84.20 by residue)
QMean score : 0.764
(partial model without unconserved sides chains):
PDB file :
Tito_1JJE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JJE-query.scw
PDB file :
Tito_Scwrl_1JJE.pdb
: