Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEMETPSAINGNPSWHLADSPAVNGATGHSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLGSLFSRK
2O1Y Chain:A ((5-174))
MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESE----------------------------------------AVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQERL-----------------------
General information:
TITO was launched using:
RESULT:
Template:
2O1Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82993 for 1148 contacts (-72.3/contact) +
2D Compatibility (PS) -17946 + (NN) -4612 + (LL) 3212
1D Compatibility (HY) -22400 + (ID) 8450
Total energy: -133189.0 ( -116.02 by residue)
QMean score : 0.407
(partial model without unconserved sides chains):
PDB file :
Tito_2O1Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2O1Y-query.scw
PDB file :
Tito_Scwrl_2O1Y.pdb
: