Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAASGEQAPCSVYFCGSIRGGREDQALYARIVSRLRRYGKVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVWDYAEGEVETMLDRYFEAYLPQKTASSSHPSA
2KLH Chain:B ((4-144))
----------SVYFCGSIRGGREDQALYARIVSRLRRYGKVLTEHVADAELEPLGEEAAGGDQFIHEQALNWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVWDYAEGEVETMLDRYFEAYL------------
General information:
TITO was launched using:
RESULT:
Template:
2KLH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93119 for 980 contacts (-95.0/contact) +
2D Compatibility (PS) -15613 + (NN) -8422 + (LL) 756
1D Compatibility (HY) -20400 + (ID) 7000
Total energy: -143798.0 ( -146.73 by residue)
QMean score : 0.405
(partial model without unconserved sides chains):
PDB file :
Tito_2KLH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KLH-query.scw
PDB file :
Tito_Scwrl_2KLH.pdb
: