Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMLLETQDALYVALELVIAALSVAGNVLVCAAVGTANTLQTPTNYFLVSLAAADVAVGLFAIPFAITISL-------GFCTDFYGCLFLACFVLVLTQSSIFSLLAVAVDRYLAICVPLRYKSLVTGTRARGVIAVLWVLAFGIGLTPFL--GWNSKDSATNNCTEPWDGTTNESCCLVKCLFENVVPMSYMVYFNFFGCVLPPLLIMLVIYIKIFLVA---CRQLQRTELMDHSRTTLQREIHAAKSLAMIVGIFALCWLPVHAVNCVTLFQPAQGKNKPKWAMNMAILLSHANSVVNPIVYAYRNRDFRYTFHKIISRYLLCQADVKSGNGQAGVQPALGVGL
2Y04 Chain:B ((20-300))---------------LVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLC-----VTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQ------DPGCC------DFVTNRAYAIASSIISFYI-PLLIMIFVALRVYREAKEQIRKIDRASKRKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVF---NRDLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLA--------------------------


General information:
TITO was launched using:
RESULT:

Template: 2Y04.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -234459 for 1977 contacts (-118.6/contact) +
2D Compatibility (PS) -27751 + (NN) -7662 + (LL) 4776
1D Compatibility (HY) -31200 + (ID) 5100
Total energy: -301396.0 ( -152.45 by residue)
QMean score : 0.287

(partial model without unconserved sides chains):
PDB file : Tito_2Y04.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2Y04-query.scw
PDB file : Tito_Scwrl_2Y04.pdb: