Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MATVNTDATDKDISKFKVTFTLVVSGIECITGILGSGFITAIYGAEWARGKTLPTGDRIMLMLSFSRLLLQIWMMLENIFSLLFRIVYNQNSVYILFKVITVFLNHSNLWFAAWLKVFYCLRIANFNHPLFFLMKRKIIVLMPWLLRLSVLVSLSFSFPLSRDVFNVYVNSSIPIPSSNSTEKKYFSETNMVNLVFFYNMGIFVPLIMFILAATLLILSLKRHTLHMGSNATGSRDPSMKAHIGAIKATSYFLILYIFNAIALFLSTSNIFDTYSSWNILCKIIMAAYPAGHSVQLILGNPGLRRAWKRFQHQVPLYLKGQTL |
| 3GAA Chain:A ((4-246)) | MIMVNKKASESQVME---LEKRNYNNPVVLCGFAGSTPTGVLAASYIVETLGMHQVAHL-----ISQHIPPVAVFVGGKLRHPFRIYANNSNTVLVAMCE-----------------------VPISSAHIYEISNTLMNWIDQVGASEIVIMEGSPANGIPEERPVFAVA-------EKPKLDKFKKAGIQPADSAIIAGMGGGILNECLVRKITGLSFITPTSVDIPD----------------PGAVLSIIEAINKAYNLKIKTDL--------------------------LEEQVKALDEQIKKIEEQYKELQEKQKE |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GAA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -242312 for 1942 contacts (-124.8/contact) +
2D Compatibility (PS) -25393 + (NN) -488 + (LL) 6452
1D Compatibility (HY) -2800 + (ID) 1450
Total energy: -265991.0 ( -136.97 by residue)
QMean score : 0.297
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