Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MITFLPII------FSILVVVTF-----VIGNFANGFIALVNST---EWVKRQKISFADQ-IVTALAVSRV-GLLWVLLLNWYSTVLNPAFCSVELRTTAYNIWAVTGHFSNWPATSLS-----IFYLLKIAN----FSNLIFLRLKRRVKSVILVVLLGPLLFLACHLFVVNMNQIVWTKEYEGNMTWKIKLRRAMYLSDTTVTMLANLVPFTVTLISFLLLVCSLCKHLKKMQLHGKGSQDPSTKVHIKVLQTVISFFLLRAIYFVSVIISVWSFKNLENKPVFMFCQAIGFSCSSAHPFILIWGNKKLKQTYLSVLWQMRY- |
2W18 Chain:A ((24-356)) | NLQLVSELKNPSGSCSVDVSAMFWEKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTI-----MNNIVIWNLKTGQLLKKMHIDDASVCHKAYSEM--GLLFIVLSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILT------SGTIAIWDLLLGQCTALLPPVQHWSFVKWSGTDSHLLAGQKDGN------IFVYHYS |
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General information:
TITO was launched using:
| RESULT:
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Template: 2W18.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -303668 for 2238 contacts (-135.7/contact) +
2D Compatibility (PS) -29997 + (NN) 6197 + (LL) 2400
1D Compatibility (HY) -13600 + (ID) 2500
Total energy: -341168.0 ( -152.44 by residue)
QMean score : 0.216
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