Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAKQYDSVECPFCDEVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVD-------NYELYEKL---ELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDPMPSDLKGMLSTHLTSMFEYLAPPRRKGSQITQQSTNQSRNPATTNQTEFERVF |
1V0O Chain:B ((3-284)) | -----------------KYHGLEKIGEGTYGVVYKAQNN-YGETFALKKIRL----------TIREISILKELKHSNIVKLYDVIHTKKR--------LVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIP----VRKYTHEVVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKG-------------LDESGIDLLSKMLKLDPNQRITAKQALEHAYFKEN------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1V0O.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -174735 for 2053 contacts (-85.1/contact) +
2D Compatibility (PS) -27736 + (NN) -7433 + (LL) 5264
1D Compatibility (HY) -31200 + (ID) 5950
Total energy: -241790.0 ( -117.77 by residue)
QMean score : 0.480
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