Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
TIQCGTVTSTLAQCLTYLTNS---GP-------------LPSQCCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIK--G-LN-------TDLVAALPTTCGVSIPYPISFSTNCDSISTAV
1SM7 Chain:A ((13-101))
--------QHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE--------DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQI----------------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46246 for 413 contacts (-112.0/contact) +
2D Compatibility (PS) -6227 + (NN) -1704 + (LL) 1892
1D Compatibility (HY) -3200 + (ID) 900
Total energy: -56385.0 ( -136.53 by residue)
QMean score : 0.392
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: