Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------QCNAGSLAVCTSPIISGTPP-----SKTCCNNLKSQRGCFCKFARNPAYSSYI-----NSRNAGKTLTSCGIAVPKC------------------------------------------------------
1KNG Chain:A ((50-193))
RPAPQTALPPLEGLQADNVQVPGLDPAAFKG-KVSLVNVWASWCVPCHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQMEKAL
General information:
TITO was launched using:
RESULT:
Template:
1KNG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25383 for 360 contacts (-70.5/contact) +
2D Compatibility (PS) -6833 + (NN) -193 + (LL) 52
1D Compatibility (HY) -3600 + (ID) 350
Total energy: -36307.0 ( -100.85 by residue)
QMean score : 0.146
(partial model without unconserved sides chains):
PDB file :
Tito_1KNG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KNG-query.scw
PDB file :
Tito_Scwrl_1KNG.pdb
: