Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QSPPPPQCDPG--LLSPCAAPIFFGTA-PSASCCSSLKA-----------QQGCFCQYAKDPMYASY--INSTNARKMIAACGIPLPNCG
1AFH Chain:A ((2-80))
-----ISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNC--LKNAA-AGVSGLNAGNAASIPSKCGVSIP---
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39764 for 432 contacts (-92.0/contact) +
2D Compatibility (PS) -6643 + (NN) -3600 + (LL) -220
1D Compatibility (HY) -2800 + (ID) 950
Total energy: -53977.0 ( -124.95 by residue)
QMean score : 0.274
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: