Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------DEMMGRC-----MHEIANCLVAIDKGTKLPSYCCGRMVKPQPC-ACKYFIKNPVLLP-------RLLIACRVPHPKC----
1IM3 Chain:D ((1-95))
PWFQIEDNRCYIDNGKLFARGSIVGNMSRFVFDPKADYGGVGENLYVHADDVEFVPGESLKWNVRNLDVMPIFETLALRLVLQGDVIWLRCVPEL
General information:
TITO was launched using:
RESULT:
Template:
1IM3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32429 for 344 contacts (-94.3/contact) +
2D Compatibility (PS) -6951 + (NN) 1547 + (LL) 0
1D Compatibility (HY) -2000 + (ID) 700
Total energy: -40533.0 ( -117.83 by residue)
QMean score : 0.284
(partial model without unconserved sides chains):
PDB file :
Tito_1IM3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IM3-query.scw
PDB file :
Tito_Scwrl_1IM3.pdb
: