Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VCDMDNDDFMACQPAAAATT--DPQPA----PSEACCATLGKADLRCLCSYKNSPWLSL--------------Y-N--ID----PKRAMELPAKCGLTTPPDC
1B1U Chain:A ((13-108))
----PHNPLDSCRWYVSTRTCGVGPRLATQEMKARCCRQLEAIPAYCRCEAVRILMDGVVTPSGQHEGRLLQDLPGCPRQVQRAFAPKLVTEVECNLATI---
General information:
TITO was launched using:
RESULT:
Template:
1B1U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5672 for 453 contacts (-12.5/contact) +
2D Compatibility (PS) -7168 + (NN) -4324 + (LL) 220
1D Compatibility (HY) -2400 + (ID) 500
Total energy: -19844.0 ( -43.81 by residue)
QMean score : 0.281
(partial model without unconserved sides chains):
PDB file :
Tito_1B1U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B1U-query.scw
PDB file :
Tito_Scwrl_1B1U.pdb
: