Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
CNINANHLEKCRPAVI----GD-NPPS-------PIKECCELLQAANLKCICRFKS-VLP-------VL-A----VYPSKVQALLSKCGLTTIPPACQALRN
2LVF Chain:A ((16-107))
-----QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS--PMRCPM---
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33122 for 379 contacts (-87.4/contact) +
2D Compatibility (PS) -7127 + (NN) -4625 + (LL) 696
1D Compatibility (HY) -2400 + (ID) 750
Total energy: -47328.0 ( -124.88 by residue)
QMean score : 0.566
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: