Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGECGRMPINQAAASLSPCLPATKNPR------G---KVPPVCCAKVGALIRTNPRCLCAVMLS---PLAKK-----------A-G----I-N-PGIAIGVPKRCNIRNRPAGKRCGRYIVP
1B1U Chain:A ((16-110))
--------------PLDSCRWYVSTRTCGVGPRLATQEMKARCCRQLEAI---PAYCRCEAVRILMDGVVTPSGQHEGRLLQDLPGCPRQVQRAFAPKLVTEVECNLATIHG----------
General information:
TITO was launched using:
RESULT:
Template:
1B1U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32293 for 403 contacts (-80.1/contact) +
2D Compatibility (PS) -6399 + (NN) 24 + (LL) 1484
1D Compatibility (HY) -3200 + (ID) 500
Total energy: -40884.0 ( -101.45 by residue)
QMean score : 0.213
(partial model without unconserved sides chains):
PDB file :
Tito_1B1U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B1U-query.scw
PDB file :
Tito_Scwrl_1B1U.pdb
: