Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QVCGANLS-GLMNECQRYVSNA----G---PNSQP-----------PSRSCCALIRPIDVPCACRYVSRDVTNYI------------DMDKVVYVARSCGKKIPSGYKCGSYTIPAA
1PSY Chain:A ((17-116))
-QCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV----------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40141 for 491 contacts (-81.8/contact) +
2D Compatibility (PS) -7338 + (NN) -4690 + (LL) 556
1D Compatibility (HY) -2000 + (ID) 600
Total energy: -54213.0 ( -110.41 by residue)
QMean score : 0.227
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: