Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-APAGTTCEQLESVARS----CTGYLKRSLIFLNDACCDGAESVYDALTTDAAVDLGFVCRCLRGFVISESLRPYLYRVANLPRLCRFKDRGPIPYNNSTIHDCRFSGTTRHSL--
3F62 Chain:A ((18-125))
GAMVETKCPNLDIVTSSGEFHCSGCVEHMPEF--------SYMYWLAKDMKSDEDTKFIEHLGDGINEDETVRTTDGGITTLRKVLHVTDTNKFAHYRFTCVLTTLDGVSKKNIWL
General information:
TITO was launched using:
RESULT:
Template:
3F62.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33645 for 661 contacts (-50.9/contact) +
2D Compatibility (PS) -10401 + (NN) 501 + (LL) 28
1D Compatibility (HY) -3600 + (ID) 950
Total energy: -48067.0 ( -72.72 by residue)
QMean score : 0.050
(partial model without unconserved sides chains):
PDB file :
Tito_3F62.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F62-query.scw
PDB file :
Tito_Scwrl_3F62.pdb
: