Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VDCKDVNSNLATCIPYLTGKD-----T-AP-----------PTTCCDGVKNLPKIAQTTADRRAACECVKAAASHY--TI-------N-EKAASSLPKDCGAVINIPISKTTNCQQIN
1W2Q Chain:A ((23-114))
-------VNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEME----N--TQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAP-------------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27422 for 407 contacts (-67.4/contact) +
2D Compatibility (PS) -6477 + (NN) -495 + (LL) 1748
1D Compatibility (HY) -2400 + (ID) 600
Total energy: -35646.0 ( -87.58 by residue)
QMean score : 0.314
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: