Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVPCSTVDMKAAACVGFATGKDSKPSSACCTGLQQLAQTVKSVDDKKAICRCLKASSKSL--GIKDQFLSKIPAACNIKVGFPVSTATNCETIH
1N89 Chain:A ((5-65))
--------SQLAVCASAILSG-AKPSGECCGNLRA-----------QQGCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVP-------------
General information:
TITO was launched using:
RESULT:
Template:
1N89.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13811 for 367 contacts (-37.6/contact) +
2D Compatibility (PS) -6006 + (NN) 933 + (LL) 1924
1D Compatibility (HY) -1200 + (ID) 700
Total energy: -18860.0 ( -51.39 by residue)
QMean score : 0.293
(partial model without unconserved sides chains):
PDB file :
Tito_1N89.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N89-query.scw
PDB file :
Tito_Scwrl_1N89.pdb
: