Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---LTCGQVTSTLAPCLPYLMNRGPLGGCCG-GVKGLLGQAQ-TTVDRQAACACLKSAASSFTDLDLGKAASLPSTCNVNIPYKISPSTDCSKVQ
1D8J Chain:A ((1-81))
ALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLMTEALVNNPKIEVID-----GKYAFKPKYNVR---------
General information:
TITO was launched using:
RESULT:
Template:
1D8J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38352 for 464 contacts (-82.7/contact) +
2D Compatibility (PS) -7701 + (NN) 420 + (LL) 508
1D Compatibility (HY) -2800 + (ID) 500
Total energy: -48425.0 ( -104.36 by residue)
QMean score : 0.352
(partial model without unconserved sides chains):
PDB file :
Tito_1D8J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D8J-query.scw
PDB file :
Tito_Scwrl_1D8J.pdb
: