Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------ITCGQVASS---LAPCISYLQK-------------GGVPSASCCSGVKALNSAASTTADRKTACNCLKNLA-----GPKSGINEGNAASLPGKCKVIVPYWISTFTNCANIK
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCM--------CPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNL-------MSQPCQM--
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36642 for 495 contacts (-74.0/contact) +
2D Compatibility (PS) -7260 + (NN) 1449 + (LL) 1480
1D Compatibility (HY) -3600 + (ID) 850
Total energy: -45423.0 ( -91.76 by residue)
QMean score : 0.380
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: