Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AITCGQVSSALSSCLGYLKNG---GA-------------------VPPGCCSGIKNLNSAAQTTADRQAACKCLKTFSNSIP--G-I-------NLGLASGLPGKCGVSVPYKISPSTDCSKVT
1PSY Chain:A ((25-117))
--------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVR---------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29321 for 444 contacts (-66.0/contact) +
2D Compatibility (PS) -5887 + (NN) 254 + (LL) 1644
1D Compatibility (HY) -3600 + (ID) 800
Total energy: -37710.0 ( -84.93 by residue)
QMean score : 0.263
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: