Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GGVVEICNVSKDDLMPCKPAVTQ----PPA-----------QPVQACCSVLSTANLTCFCEFGNNYPSL---LRMFGI-----DPDLAKALPGECKLNSPPGC
1SM7 Chain:A ((14-104))
------------HLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGTC
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29403 for 433 contacts (-67.9/contact) +
2D Compatibility (PS) -6550 + (NN) 1523 + (LL) 476
1D Compatibility (HY) -1200 + (ID) 800
Total energy: -35954.0 ( -83.03 by residue)
QMean score : 0.283
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: