Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QCGGSFVDIEAQCSQFVHKT---GPKT----P------PSLGCCQVVKTLNVNCVCRFVTPQVEAMI--------SMEK----VVYVARTCGVTVRAGTQCGKFKFLAMPIFQG
1SM7 Chain:A ((15-103))
---------LRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGT----------------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40992 for 424 contacts (-96.7/contact) +
2D Compatibility (PS) -5922 + (NN) 3753 + (LL) 1376
1D Compatibility (HY) -800 + (ID) 450
Total energy: -43035.0 ( -101.50 by residue)
QMean score : 0.225
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: