Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----ACDPKQLQPCLAAITGGGQPSGDCCAKLKEQQPCLCGFSKNP-AFAQY--------ISSPNSRKVLTACGIPYPSC------------------------
1U78 Chain:A ((2-104))
PRGSALSDTERAQ-LDVMKLLNVSLHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTARDIRNELQLSASKRTILNVIKRSG
General information:
TITO was launched using:
RESULT:
Template:
1U78.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17720 for 344 contacts (-51.5/contact) +
2D Compatibility (PS) -6448 + (NN) -877 + (LL) 56
1D Compatibility (HY) -2400 + (ID) 500
Total energy: -27889.0 ( -81.07 by residue)
QMean score : 0.407
(partial model without unconserved sides chains):
PDB file :
Tito_1U78.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U78-query.scw
PDB file :
Tito_Scwrl_1U78.pdb
: