Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
TTVESFGEVAQSCVVTELAPCLPAMT-TAGDP-----TTECCDKLVEQKPCLCGYIRN-PA--YSMYVTSPNGRKVLDFCKVP-FPSC-----------------------------
1F9M Chain:A ((10-121))
--MEAIVGKVTEVNKDTF---WPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQAARS
General information:
TITO was launched using:
RESULT:
Template:
1F9M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26899 for 391 contacts (-68.8/contact) +
2D Compatibility (PS) -7869 + (NN) -2173 + (LL) 164
1D Compatibility (HY) -2800 + (ID) 350
Total energy: -39927.0 ( -102.12 by residue)
QMean score : 0.160
(partial model without unconserved sides chains):
PDB file :
Tito_1F9M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F9M-query.scw
PDB file :
Tito_Scwrl_1F9M.pdb
: