Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-AGACGKTSPDQEAMK----LAPCAMAAQDAKAAVS------------DSCCAQVRSIGQNPSCLCSVMLS-----DMAKASGIKAEIAITIPKRCNIANRPVGYKCGDYTLP
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL--DEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLMSQ----PCQM----
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27790 for 527 contacts (-52.7/contact) +
2D Compatibility (PS) -8315 + (NN) -2327 + (LL) 100
1D Compatibility (HY) -5600 + (ID) 850
Total energy: -44782.0 ( -84.98 by residue)
QMean score : 0.330
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: