Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGECGKTPIRSAAASLSPCLSAAGNV------RA---AVPPTCCSKVGSLIKTAPKCLCAVLLS---PLAKQ-----------A-G----I-K-PGIAITIPKRCNIGNRPAGKKCGSK
1B1U Chain:A ((16-110))
--------------PLDSCRWYVSTRTCGVGPRLATQEMKARCCRQLEAI---PAYCRCEAVRILMDGVVTPSGQHEGRLLQDLPGCPRQVQRAFAPKLVTEVECNLATIHG-------
General information:
TITO was launched using:
RESULT:
Template:
1B1U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44477 for 396 contacts (-112.3/contact) +
2D Compatibility (PS) -6368 + (NN) -865 + (LL) 840
1D Compatibility (HY) -3200 + (ID) 500
Total energy: -54570.0 ( -137.80 by residue)
QMean score : 0.441
(partial model without unconserved sides chains):
PDB file :
Tito_1B1U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B1U-query.scw
PDB file :
Tito_Scwrl_1B1U.pdb
: