Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ALTCDDVTGQLFPCLTYLTLRGKNV--R--P----------PPQGCCNGVRRLNKQAQSKADRQKACNCIKGLAGTFT----GLN-----LDLVEGLPRRCNVNIPY--KISPSTDCKKVN
1W2Q Chain:A ((22-121))
-------RVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMEN------TQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDV--------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35144 for 439 contacts (-80.1/contact) +
2D Compatibility (PS) -7486 + (NN) -756 + (LL) 1276
1D Compatibility (HY) -1200 + (ID) 650
Total energy: -43960.0 ( -100.14 by residue)
QMean score : 0.266
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: