Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QTICNMPASGLMACKPAVT----PP-NPPP-------PTSTCCSALSQADMRCLCSYKNSQL---------LPS--LGIDPNLAMKLPSMCKLPHPANC
2LVF Chain:A ((16-105))
--------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS-PMRC
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23557 for 385 contacts (-61.2/contact) +
2D Compatibility (PS) -7195 + (NN) -5981 + (LL) 608
1D Compatibility (HY) -2800 + (ID) 850
Total energy: -39775.0 ( -103.31 by residue)
QMean score : 0.330
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: