Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ACGSSYDLAACLPAAESD---I--Q-------------PSAQCCTQLSSYLATDTPEECLCQTAYSPFFQ-S----G--A--D-IQFAIKIPQKCNLSYRAGIQCNGNTIPGGQ
1W2Q Chain:A ((23-112))
-----VNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEME---NTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFR----------------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34408 for 387 contacts (-88.9/contact) +
2D Compatibility (PS) -6370 + (NN) -129 + (LL) 196
1D Compatibility (HY) -3200 + (ID) 600
Total energy: -44511.0 ( -115.02 by residue)
QMean score : 0.291
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: