Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGCDIDLLLPCLNASRDP---RV------------------KPDKRCCDAIRQFLPPRKQKSAIDCLCRLATSKEAVAL---K-------INLSAAIAIPQKCGIKFEQRFYCQGRLVPGS
1PSY Chain:A ((25-116))
-----KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV----------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22448 for 419 contacts (-53.6/contact) +
2D Compatibility (PS) -6627 + (NN) -4358 + (LL) 1248
1D Compatibility (HY) -400 + (ID) 650
Total energy: -33235.0 ( -79.32 by residue)
QMean score : 0.322
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: