Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------------ASCDATALSPCVGAIMLGGAVTPGCC--------ARLKAQQGCLCQ-YARNPSYAGYV------GSPRAQGVVQACGLPKPKC-
1PRT Chain:F ((2-99))
LPTHLYKNFTVQELALKLKGKNQEFCLTAFMSGRSLVRACLSDAGHEHDTWFDTMLGFAISAYALKSRIALTVEDSPYPGTPGDLLELQICPL-NGYCE
General information:
TITO was launched using:
RESULT:
Template:
1PRT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21563 for 347 contacts (-62.1/contact) +
2D Compatibility (PS) -7490 + (NN) -2729 + (LL) -140
1D Compatibility (HY) -5200 + (ID) 800
Total energy: -37922.0 ( -109.29 by residue)
QMean score : 0.087
(partial model without unconserved sides chains):
PDB file :
Tito_1PRT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PRT-query.scw
PDB file :
Tito_Scwrl_1PRT.pdb
: