Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
SSDVCTVVSPVLESCYIALQSGESFMKSESVCCKSLEILENRIR-DSDHQFTRYAVCECFKASDNDKQVL---VNENLL----EVQVLCGPHVPYPITSYSDCLQYADEEIARTAL-------------
1IM3 Chain:D ((1-95))
---------------------------------PWFQIEDNRCYIDNGKLFARGSIVGNMSRFVFDPKADYGGVGENLYVHADDVEFVPGESLKWNV-RNLDVMPIFETLALRLVLQGDVIWLRCVPEL
General information:
TITO was launched using:
RESULT:
Template:
1IM3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12040 for 451 contacts (-26.7/contact) +
2D Compatibility (PS) -7380 + (NN) 6904 + (LL) 2304
1D Compatibility (HY) -4800 + (ID) 800
Total energy: -15812.0 ( -35.06 by residue)
QMean score : -0.078
(partial model without unconserved sides chains):
PDB file :
Tito_1IM3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IM3-query.scw
PDB file :
Tito_Scwrl_1IM3.pdb
: