Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DTTCDNNINGILSNCKSTNPSPACCSFMRKITLECVCPRITSDVTKYI--------SLSSILTIA----KICHRTLPHQYQCGSYLLP
1PNB Chain:B ((11-69))
--------------------REQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGT---------
General information:
TITO was launched using:
RESULT:
Template:
1PNB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32682 for 263 contacts (-124.3/contact) +
2D Compatibility (PS) -4305 + (NN) 4029 + (LL) 368
1D Compatibility (HY) -2400 + (ID) 500
Total energy: -35490.0 ( -134.94 by residue)
QMean score : 0.135
(partial model without unconserved sides chains):
PDB file :
Tito_1PNB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PNB-query.scw
PDB file :
Tito_Scwrl_1PNB.pdb
: