Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AECKNNIADLLPCQAAAQ----SETS---------TPSTECCTAVGKFKDDPACLCSTIAAAQAA------GFT-----IDAPVAATIPKRCKLDGYPTSCSKSK
2LVF Chain:A ((17-105))
--------MLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM--DESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS--PMRC----
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17950 for 366 contacts (-49.0/contact) +
2D Compatibility (PS) -6965 + (NN) -1869 + (LL) 536
1D Compatibility (HY) -4000 + (ID) 850
Total energy: -31098.0 ( -84.97 by residue)
QMean score : 0.397
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: