Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DDDTTLDCDSQVN-GLVGNCMTAVLIG---T----K----P-----------SSKCCKFVRAAQPDCVCPKITGDVTKVL------------KLSTALKIAKRCNRELPHNYQCGSYTLP
1PSY Chain:A ((16-116))
-----QQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV--------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27300 for 471 contacts (-58.0/contact) +
2D Compatibility (PS) -7061 + (NN) -4694 + (LL) 228
1D Compatibility (HY) -1200 + (ID) 650
Total energy: -40677.0 ( -86.36 by residue)
QMean score : 0.415
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: