Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QQLPQGCGPKL--GVLLPCLPFLQGQG------SNP-----------TQPCCNGLETVVKLNPACLCALVNS----Q---L-GN---RINITLALSLPSLCNLAGVTIDLCNPTGKFSFKI
1W2Q Chain:A ((15-119))
-----SCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEME-NTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFR--APQRCDL--------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50804 for 444 contacts (-114.4/contact) +
2D Compatibility (PS) -7627 + (NN) -44 + (LL) 928
1D Compatibility (HY) -2400 + (ID) 900
Total energy: -60847.0 ( -137.04 by residue)
QMean score : 0.195
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: