Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QQLPQGCGPKLG--VLLPCLPFLQGQGS----------NP-----------TQPCCNGLETVVKSNPACLCALVNSQ-------LG---NR--INITLALSLPSLCNLAGVTIDLCNPTGKFSFKI
1PSY Chain:A ((16-116))
----QQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV---RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV------------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42940 for 430 contacts (-99.9/contact) +
2D Compatibility (PS) -6876 + (NN) -2927 + (LL) 1308
1D Compatibility (HY) -2000 + (ID) 850
Total energy: -54285.0 ( -126.24 by residue)
QMean score : 0.305
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: