Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DMSPTECKEERK-VAGNACRPVLYWR--------SP----S-------ADCCQRVRVS--HVECVCPYVSTKTAAIIGG-------LG-VPYVVKKIEGCGRTVPRKFKCGSITTP
1W2Q Chain:A ((14-112))
----SSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFR-------------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20121 for 414 contacts (-48.6/contact) +
2D Compatibility (PS) -6890 + (NN) 1367 + (LL) 400
1D Compatibility (HY) -2400 + (ID) 500
Total energy: -28144.0 ( -67.98 by residue)
QMean score : 0.081
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: