Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APSAAECKEETR--LAIKACKPVVYG-----MDP----------SPACCERARVTHVECVCPLITPKLAALI-------------DVNKAVRIIEGCGRKVPRHYKCGSITTP
2LVF Chain:A ((4-101))
--AQEECREQMQRQQMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS-------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24262 for 409 contacts (-59.3/contact) +
2D Compatibility (PS) -7079 + (NN) -1593 + (LL) 380
1D Compatibility (HY) -2000 + (ID) 600
Total energy: -35154.0 ( -85.95 by residue)
QMean score : 0.362
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: