Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QGCRGDFR-NLAAQCMPYVQKP-GP---K---T-PP-----------SKGCCNAVRTVDVPCACQHLPPGVGGTV------------SLEKVAFVLRVCGKPLKPGTKCGSYTVPPAV
1PSY Chain:A ((17-116))
-QCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV-----------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39523 for 484 contacts (-81.7/contact) +
2D Compatibility (PS) -7125 + (NN) -4984 + (LL) 272
1D Compatibility (HY) -3200 + (ID) 700
Total energy: -55260.0 ( -114.17 by residue)
QMean score : 0.262
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: