Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DQVCKGDFGS--LVEQCLQYVQKP---GPKT----P------PSEGCCNAINTVDIPCVCQHLPPVVGDIV------------SLEKVAFVLRACGKPLEPGTKCGNYTVPPAV
1SM7 Chain:A ((3-103))
-QKCQREFQQEQHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGT------------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54700 for 528 contacts (-103.6/contact) +
2D Compatibility (PS) -7043 + (NN) 1015 + (LL) 236
1D Compatibility (HY) -2000 + (ID) 800
Total energy: -63292.0 ( -119.87 by residue)
QMean score : 0.259
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: