Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DPDPKCKNVAESIIPCVEYIMTP---DA-S-N---------------PPAPCCNGMTSLAGQVQALPERQFACRCIKDGIFDLP------D----LNLAALAALPNNCGVDLRFQITPDMDCDNLN
1PSY Chain:A ((25-120))
----------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV--RCMR----------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42192 for 492 contacts (-85.8/contact) +
2D Compatibility (PS) -6838 + (NN) -3214 + (LL) 656
1D Compatibility (HY) -1600 + (ID) 650
Total energy: -53838.0 ( -109.43 by residue)
QMean score : 0.216
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: