Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VITCPDTDITLTACLSYVAYP---NP------------PPPQPCCDAVLDVTAQARTREDRQAVCSCLKGLMIGIP--G----L----DLTALAALPKVCGANIGYEISPGMDCSKIN
1SM7 Chain:A ((13-100))
--------QHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE--------DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQ--------------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62899 for 424 contacts (-148.3/contact) +
2D Compatibility (PS) -6349 + (NN) 1779 + (LL) 1316
1D Compatibility (HY) -2800 + (ID) 800
Total energy: -69753.0 ( -164.51 by residue)
QMean score : 0.312
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: