Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
SQVNAPCTWTEIS-EEYDYCGDSLTRG----VPW---V-SP-----------LKVCCDTIKLNKMKCICQVVTKTFSQNF------------DFYKLSKLSHACGDLLVPGSYCGGNYH
1PSY Chain:A ((17-116))
------QCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV-------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21782 for 480 contacts (-45.4/contact) +
2D Compatibility (PS) -6756 + (NN) -1818 + (LL) 272
1D Compatibility (HY) -400 + (ID) 600
Total energy: -31084.0 ( -64.76 by residue)
QMean score : 0.237
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: