Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFPKKVLGEEWEEGRKFNKLYQKDKQRKLIKRQGILR--ESQNGIQVYKEDPEIVEIAKPIGKWTQMVMQDGGLMQRLAQLMKRESGRKGFWELFVEAQASTHGKHKGKGR
2GOM Chain:A ((105-165))
----------------------IKKEQKLIQAQNLVREFEKTHTVSAHRKAQKAVNLVSFEYKVKKMVLQE-----RIDNVLKQGLVR-----------------------
General information:
TITO was launched using:
RESULT:
Template:
2GOM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 13519 for 359 contacts (37.7/contact) +
2D Compatibility (PS) -6717 + (NN) -3840 + (LL) 2936
1D Compatibility (HY) -4000 + (ID) 750
Total energy: 1148.0 ( 3.20 by residue)
QMean score : 0.352
(partial model without unconserved sides chains):
PDB file :
Tito_2GOM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GOM-query.scw
PDB file :
Tito_Scwrl_2GOM.pdb
: