Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQRSNILEITAGLFVLVFTIFLAFFAINKLSDIKKSYKGC-YKIYGFFSNANGIEVGDSVKIS-GVNIGSITGISLDKATYVARLDMCISKDIKLPIDSS-ALITSSGVVGSKFVNISPGSGIKL-ISNGG---KIEYTQSEANVGGIIDKILNMFSK
3MAH Chain:A ((7-151))
-DCIKAVAAKDGITVIKVKS-----------SNKLLSWHFMRKLFEIFEFYQ-------EPVDMVATSEVGVSLTIDNDKNLPDIVRALSDIGDVTVDKDMVIICIVGVGFEARIINALKGVPVRMISYGGSNYNVSVLVKAEDKKKALIALSNKLFN
General information:
TITO was launched using:
RESULT:
Template:
3MAH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64188 for 902 contacts (-71.2/contact) +
2D Compatibility (PS) -13964 + (NN) -2541 + (LL) 1456
1D Compatibility (HY) -1200 + (ID) 800
Total energy: -81237.0 ( -90.06 by residue)
QMean score : 0.253
(partial model without unconserved sides chains):
PDB file :
Tito_3MAH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MAH-query.scw
PDB file :
Tito_Scwrl_3MAH.pdb
: