Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGAACRGYCRKIYLAIDNVLYAINETMVMWKKELKSLVKGNPTIFNDKLAISTLDDCLYMLDMRMIVQSGPIISPVIMIVTK
3LAY Chain:A ((44-122))
LTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSP---DTAKINAVAKEMESLGQKLDEQRVKRDVAMAQAGIP
General information:
TITO was launched using:
RESULT:
Template:
3LAY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30836 for 440 contacts (-70.1/contact) +
2D Compatibility (PS) -8377 + (NN) -2501 + (LL) 256
1D Compatibility (HY) 2400 + (ID) 500
Total energy: -39558.0 ( -89.90 by residue)
QMean score : 0.435
(partial model without unconserved sides chains):
PDB file :
Tito_3LAY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LAY-query.scw
PDB file :
Tito_Scwrl_3LAY.pdb
: