Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKKYDETKVKPAISTSQEPKRINGSKFQSVLSKRRYDINFDDKKYAVKTVKTRFLETEQQSSKLRDLLESIPVIGRFLAKIFTSEKETYKKLQLQIDRSSKIRNESRIDDKYTEEISSK--LKKSNIEQVDDKKSRSP----------
3RNV Chain:A ((336-458))
------------------MYIAKEGYCYINIFLAMLVNVKESQAKEFTKVVRDKLVGELGKWPTLLDVATACYFLKVFYPDVANAEL-----PRMLVDHKT---KIIHVVDSYGSLSTGYHVLKTNTVEQLIKFTRCNLESSLKHYRVG
General information:
TITO was launched using:
RESULT:
Template:
3RNV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 30963 for 737 contacts (42.0/contact) +
2D Compatibility (PS) -11344 + (NN) -2252 + (LL) 1868
1D Compatibility (HY) -6000 + (ID) 750
Total energy: 12485.0 ( 16.94 by residue)
QMean score : 0.230
(partial model without unconserved sides chains):
PDB file :
Tito_3RNV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RNV-query.scw
PDB file :
Tito_Scwrl_3RNV.pdb
: