Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSSDLWNFFTEVPSEGYIVESSYCTDSGCSNYIGNIDLSNIREFNLVSPDRKITKKFEANIIDFFEPRVHLSMDDSGKKINLDIAPENCSATKDGFLCIDKNEQDYKLKILIKKS
1AWC Chain:A ((2-43))
---QLWQFLLELLTD-----KDA---RDCISWVGD-E----GEFKLNQPE-LVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAAELNRLV
General information:
TITO was launched using:
RESULT:
Template:
1AWC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5597 for 222 contacts (-25.2/contact) +
2D Compatibility (PS) -4330 + (NN) -34 + (LL) 1180
1D Compatibility (HY) -4000 + (ID) 550
Total energy: -13331.0 ( -60.05 by residue)
QMean score : 0.409
(partial model without unconserved sides chains):
PDB file :
Tito_1AWC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AWC-query.scw
PDB file :
Tito_Scwrl_1AWC.pdb
: